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SynEcoSys: Data Visualization Part 5 – Trajectory Analysis

This series of instruction videos will help you to understand how to use various functions of the SynEcoSys database.

To perform trajectory analysis using the SynEcoSys database, follow these steps:

  1. Log In: Access the SynEcoSys platform with your credentials.
  2. Navigate to Data Visualization: Go to the data visualization section of the platform.
  3. Select Trajectory Analysis: Choose the trajectory analysis option.
  4. Upload or Select Data: Upload your own data or select from the available datasets within SynEcoSys.
  5. Configure Parameters: Set the parameters for your analysis, such as the specific cell types or conditions you are interested in.
  6. Run Analysis: Execute the analysis to identify and visualize cell trajectories.
  7. Visualize Results: Use the provided tools to create visual representations of the trajectories, such as pseudotime plots.

For a detailed guide, you can refer to the instructional videos provided in our Youtube channel. These videos cover various functions of the SynEcoSys database, including trajectory analysis.

UPDATE: Launching Celelens Cloud – our new data analysis tool

Now, you can conduct trajectory analysis and other types of advanced analysis in our new, code-free, single cell RNA sequencing data analysis platform, Celelens Cloud.

To make SynEcoSys more focused on providing a rich, clinically annotated database for deep data mining and clinical research, CeleLens Cloud was designed. This new platform is developed to simplify the process of single cell data analysis, making it accessible even to those without a bioinformatics background. Celelens Cloud has all functionalities for standard analysis, while also offering Advanced Analysis Functions.

For the trajectory analysis function CeleLens Cloud uses tools like Monocle2 and Monocle3. You can configure the parameters for your analysis, such as the specific cell types or conditions you are interested in, and run analysis. Lastly, you can use the platform’s visualization tools to create publication-ready figures, such as pseudotime plots.

    You can easily integrate SynEcoSys data in the Celelens Cloud platform when initiating analysis. You can either start analysis with your local dataset, with SynEcoSys data, or with combined local and SynEcoSys datasets.

    Try out Celelens Cloud with a 7-Day Free Trial!

    If you have any specific questions or need further assistance, feel free to ask here.

    Our team of bioinformatics experts is available to help in all your enquiries.