What bioinformatic solutions are available from Singleron?

We offer bioinformatic solutions to cover all the needs related to Singleron´s kits:

• CeleScope: preprocessing software for Singleron´s Kits. CeleScope is an automated pipeline that takes the raw fastq files as input and correctly detects the utilized chemistry, does barcode demultiplexing, quality and adapter trimming, mapping to the reference genome, and cell calling. It outputs a gene count matrix compatible with our SynEcoSys and the most popular downstream analysis software packages (e.g. Seurat).
• SynEcoSys: data analysis pipeline integrated with an extensive manually curated single cell database. SynEcoSys performs cell annotation using the popular CellID package with publicly available database or with our manually curated database. It also allows various QC filtering steps as well as performing differential gene expression analysis.
• CeleViz: freely available standalone single– cell data visualization tool.
• Personalized solutions